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DIMACS Workshop: Mathematical Support for Molecular Biology 1998

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Martin Farach-Colton, Fred S. Roberts, Martin Vingron, Michael S. Waterman:
Mathematical Support for Molecular Biology, Proceedings from the DIMACS Special Year, 1998. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47, DIMACS/AMS 1999, ISBN 978-0-8218-0826-9
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Foreword. Mathematical Support for Molecular Biology 1998: vii-
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Preface. Mathematical Support for Molecular Biology 1998: ix-
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Walter M. Fitch:
An introduction to molecular biology for mathematicians and computer programmers. 1-31
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Dan Gusfield, Lusheng Wang:
New uses for uniform lifted alignments. 33-51
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Martin Vingron:
Sequence alignment and phylogeny construction. 53-63
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  - conf/dimacs/Durand98
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Dannie Durand:
A new look at tree models for multiple sequence alignment. 65-84
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Alberto Apostolico, Raffaele Giancarlo:
Sequence alignment in molecular biology. 85-115
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David B. Searls:
Formal language theory and biological macromolecules. 117-140
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Christodoulos A. Floudas, John L. Klepeis, Panos M. Pardalos:
Global optimization approaches in protein folding and peptide docking. 141-171
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Craig J. Benham:
The topologically driven strand separation transition in DNA - methods of analysis and biological significance. 173-198
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Cassandra L. Smith, Takeshi Sano, Natalia E. Broude, Charles R. Cantor:
Parallel strategies for DNA manipulation and analysis. 199-212
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  - conf/dimacs/CapraraLN98
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Alberto Caprara, Giuseppe Lancia, See-Kiong Ng:
A column-generation based branch-and-bound algorithm for sorting by reversals. 213-226
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Eric M. Jordan:
Visualizing measures of genetic distance. 227-239
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Luciano Milanesi, M. Marsilli, Giancarlo Mauri, C. Rolfi, L. Uboldi:
Fragment assembly system for DNA sequencing projects. 241-258
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Xiaoqiu Huang:
Performance of the CAP2 sequence assembly program. 259-269
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João Meidanis:
A simple toolkit for DNA fragment assembly. 271-288

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